Gene Prioritization of Resistant Rice Gene against Xanthomas oryzae pv. oryzae by Using Text Mining Technologies
Joint Authors
Fang, Alex Chengyu
Zhang, Xing
Yuan, Daojun
Chen, Lingling
Webster, Jonathan
Xia, Jingbo
Source
Issue
Vol. 2013, Issue 2013 (31 Dec. 2013), pp.1-9, 9 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2013-11-25
Country of Publication
Egypt
No. of Pages
9
Main Subjects
Abstract EN
To effectively assess the possibility of the unknown rice protein resistant to Xanthomonas oryzae pv.
oryzae, a hybrid strategy is proposed to enhance gene prioritization by combining text mining technologies with a sequence-based approach.
The text mining technique of term frequency inverse document frequency is used to measure the importance of distinguished terms which reflect biomedical activity in rice before candidate genes are screened and vital terms are produced.
Afterwards, a built-in classifier under the chaos games representation algorithm is used to sieve the best possible candidate gene.
Our experiment results show that the combination of these two methods achieves enhanced gene prioritization.
American Psychological Association (APA)
Xia, Jingbo& Zhang, Xing& Yuan, Daojun& Chen, Lingling& Webster, Jonathan& Fang, Alex Chengyu. 2013. Gene Prioritization of Resistant Rice Gene against Xanthomas oryzae pv. oryzae by Using Text Mining Technologies. BioMed Research International،Vol. 2013, no. 2013, pp.1-9.
https://search.emarefa.net/detail/BIM-1031027
Modern Language Association (MLA)
Xia, Jingbo…[et al.]. Gene Prioritization of Resistant Rice Gene against Xanthomas oryzae pv. oryzae by Using Text Mining Technologies. BioMed Research International No. 2013 (2013), pp.1-9.
https://search.emarefa.net/detail/BIM-1031027
American Medical Association (AMA)
Xia, Jingbo& Zhang, Xing& Yuan, Daojun& Chen, Lingling& Webster, Jonathan& Fang, Alex Chengyu. Gene Prioritization of Resistant Rice Gene against Xanthomas oryzae pv. oryzae by Using Text Mining Technologies. BioMed Research International. 2013. Vol. 2013, no. 2013, pp.1-9.
https://search.emarefa.net/detail/BIM-1031027
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1031027