Microsatellites in the Genome of the Edible Mushroom, Volvariella volvacea
Joint Authors
Wang, Hong
Wang, Ying
Wang, Jing-Fang
Bao, Dapeng
Chen, Mingjie
Source
Issue
Vol. 2014, Issue 2014 (31 Dec. 2014), pp.1-10, 10 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2014-01-19
Country of Publication
Egypt
No. of Pages
10
Main Subjects
Abstract EN
Using bioinformatics software and database, we have characterized the microsatellite pattern in the V.
volvacea genome and compared it with microsatellite patterns found in the genomes of four other edible fungi: Coprinopsis cinerea, Schizophyllum commune, Agaricus bisporus, and Pleurotus ostreatus.
A total of 1346 microsatellites have been identified, with mono-nucleotides being the most frequent motif.
The relative abundance of microsatellites was lower in coding regions with 21 No./Mb.
However, the microsatellites in the V.
volvacea gene models showed a greater tendency to be located in the CDS regions.
There was also a higher preponderance of trinucleotide repeats, especially in the kinase genes, which implied a possible role in phenotypic variation.
Among the five fungal genomes, microsatellite abundance appeared to be unrelated to genome size.
Furthermore, the short motifs (mono- to tri-nucleotides) outnumbered other categories although these differed in proportion.
Data analysis indicated a possible relationship between the most frequent microsatellite types and the genetic distance between the five fungal genomes.
American Psychological Association (APA)
Wang, Ying& Chen, Mingjie& Wang, Hong& Wang, Jing-Fang& Bao, Dapeng. 2014. Microsatellites in the Genome of the Edible Mushroom, Volvariella volvacea. BioMed Research International،Vol. 2014, no. 2014, pp.1-10.
https://search.emarefa.net/detail/BIM-460055
Modern Language Association (MLA)
Wang, Ying…[et al.]. Microsatellites in the Genome of the Edible Mushroom, Volvariella volvacea. BioMed Research International No. 2014 (2014), pp.1-10.
https://search.emarefa.net/detail/BIM-460055
American Medical Association (AMA)
Wang, Ying& Chen, Mingjie& Wang, Hong& Wang, Jing-Fang& Bao, Dapeng. Microsatellites in the Genome of the Edible Mushroom, Volvariella volvacea. BioMed Research International. 2014. Vol. 2014, no. 2014, pp.1-10.
https://search.emarefa.net/detail/BIM-460055
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-460055