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STIFDB—Arabidopsis Stress Responsive Transcription Factor DataBase
Joint Authors
Varghese, Susan Mary
Udayakumar, M.
Sowdhamini, R.
Ambika, S.
Karaba, N.
Shameer, K.
Source
International Journal of Plant Genomics
Issue
Vol. 2009, Issue 2009 (31 Dec. 2009), pp.1-8, 8 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2009-10-18
Country of Publication
Egypt
No. of Pages
8
Main Subjects
Abstract EN
Elucidating the key players of molecular mechanism that mediate the complex stress-responses in plants system is an important step to develop improved variety of stress tolerant crops.
Understanding the effects of different types of biotic and abiotic stress is a rapidly emerging domain in the area of plant research to develop better, stress tolerant plants.
Information about the transcription factors, transcription factor binding sites, function annotation of proteins coded by genes expressed during abiotic stress (for example: drought, cold, salinity, excess light, abscisic acid, and oxidative stress) response will provide better understanding of this phenomenon.
STIFDB is a database of abiotic stress responsive genes and their predicted abiotic transcription factor binding sites in Arabidopsis thaliana.
We integrated 2269 genes upregulated in different stress related microarray experiments and surveyed their 1000 bp and 100 bp upstream regions and 5′UTR regions using the STIF algorithm and identified putative abiotic stress responsive transcription factor binding sites, which are compiled in the STIFDB database.
STIFDB provides extensive information about various stress responsive genes and stress inducible transcription factors of Arabidopsis thaliana.
STIFDB will be a useful resource for researchers to understand the abiotic stress regulome and transcriptome of this important model plant system.
American Psychological Association (APA)
Shameer, K.& Ambika, S.& Varghese, Susan Mary& Karaba, N.& Udayakumar, M.& Sowdhamini, R.. 2009. STIFDB—Arabidopsis Stress Responsive Transcription Factor DataBase. International Journal of Plant Genomics،Vol. 2009, no. 2009, pp.1-8.
https://search.emarefa.net/detail/BIM-482677
Modern Language Association (MLA)
Shameer, K.…[et al.]. STIFDB—Arabidopsis Stress Responsive Transcription Factor DataBase. International Journal of Plant Genomics No. 2009 (2009), pp.1-8.
https://search.emarefa.net/detail/BIM-482677
American Medical Association (AMA)
Shameer, K.& Ambika, S.& Varghese, Susan Mary& Karaba, N.& Udayakumar, M.& Sowdhamini, R.. STIFDB—Arabidopsis Stress Responsive Transcription Factor DataBase. International Journal of Plant Genomics. 2009. Vol. 2009, no. 2009, pp.1-8.
https://search.emarefa.net/detail/BIM-482677
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-482677