Whole-Genome Characteristics and Polymorphic Analysis of Vietnamese Rice Landraces as a Comprehensive Information Resource for Marker-Assisted Selection
المؤلفون المشاركون
Xuan, Tran Dang
Trinh, Hien
Nguyen, Khoa Truong
Nguyen, Lam Van
Pham, Huy Quang
Huong, Can Thu
Anh, La Hoang
Caccamo, Mario
Ayling, Sarah
Diep, Nguyen Thuy
Nguyen, Cuong
Trung, Khuat Huu
Khanh, Tran Dang
المصدر
International Journal of Genomics
العدد
المجلد 2017، العدد 2017 (31 ديسمبر/كانون الأول 2017)، ص ص. 1-11، 11ص.
الناشر
Hindawi Publishing Corporation
تاريخ النشر
2017-02-07
دولة النشر
مصر
عدد الصفحات
11
التخصصات الرئيسية
الملخص EN
Next generation sequencing technologies have provided numerous opportunities for application in the study of whole plant genomes.
In this study, we present the sequencing and bioinformatic analyses of five typical rice landraces including three indica and two japonica with potential blast resistance.
A total of 688.4 million 100 bp paired-end reads have yielded approximately 30-fold coverage to compare with the Nipponbare reference genome.
Among them, a small number of reads were mapped to both chromosomes and organellar genomes.
Over two million and eight hundred thousand single nucleotide polymorphisms (SNPs) and insertions and deletions (InDels) in indica and japonica lines have been determined, which potentially have significant impacts on multiple transcripts of genes.
SNP deserts, contiguous SNP-low regions, were found on chromosomes 1, 4, and 5 of all genomes of rice examined.
Based on the distribution of SNPs per 100 kilobase pairs, the phylogenetic relationships among the landraces have been constructed.
This is the first step towards revealing several salient features of rice genomes in Vietnam and providing significant information resources to further marker-assisted selection (MAS) in rice breeding programs.
نمط استشهاد جمعية علماء النفس الأمريكية (APA)
Trinh, Hien& Nguyen, Khoa Truong& Nguyen, Lam Van& Pham, Huy Quang& Huong, Can Thu& Xuan, Tran Dang…[et al.]. 2017. Whole-Genome Characteristics and Polymorphic Analysis of Vietnamese Rice Landraces as a Comprehensive Information Resource for Marker-Assisted Selection. International Journal of Genomics،Vol. 2017, no. 2017, pp.1-11.
https://search.emarefa.net/detail/BIM-1167273
نمط استشهاد الجمعية الأمريكية للغات الحديثة (MLA)
Trinh, Hien…[et al.]. Whole-Genome Characteristics and Polymorphic Analysis of Vietnamese Rice Landraces as a Comprehensive Information Resource for Marker-Assisted Selection. International Journal of Genomics No. 2017 (2017), pp.1-11.
https://search.emarefa.net/detail/BIM-1167273
نمط استشهاد الجمعية الطبية الأمريكية (AMA)
Trinh, Hien& Nguyen, Khoa Truong& Nguyen, Lam Van& Pham, Huy Quang& Huong, Can Thu& Xuan, Tran Dang…[et al.]. Whole-Genome Characteristics and Polymorphic Analysis of Vietnamese Rice Landraces as a Comprehensive Information Resource for Marker-Assisted Selection. International Journal of Genomics. 2017. Vol. 2017, no. 2017, pp.1-11.
https://search.emarefa.net/detail/BIM-1167273
نوع البيانات
مقالات
لغة النص
الإنجليزية
الملاحظات
Includes bibliographical references
رقم السجل
BIM-1167273
قاعدة معامل التأثير والاستشهادات المرجعية العربي "ارسيف Arcif"
أضخم قاعدة بيانات عربية للاستشهادات المرجعية للمجلات العلمية المحكمة الصادرة في العالم العربي
تقوم هذه الخدمة بالتحقق من التشابه أو الانتحال في الأبحاث والمقالات العلمية والأطروحات الجامعية والكتب والأبحاث باللغة العربية، وتحديد درجة التشابه أو أصالة الأعمال البحثية وحماية ملكيتها الفكرية. تعرف اكثر