Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing
المؤلفون المشاركون
Araki, Kazuo
Aokic, Jun-ya
Kawase, Junya
Hamada, Kazuhisa
Ozaki, Akiyuki
Fujimoto, Hiroshi
Yamamoto, Ikki
Usuki, Hironori
المصدر
International Journal of Genomics
العدد
المجلد 2018، العدد 2018 (31 ديسمبر/كانون الأول 2018)، ص ص. 1-12، 12ص.
الناشر
Hindawi Publishing Corporation
تاريخ النشر
2018-03-28
دولة النشر
مصر
عدد الصفحات
12
التخصصات الرئيسية
الملخص EN
Greater amberjack (Seriola dumerili) is distributed in tropical and temperate waters worldwide and is an important aquaculture fish.
We carried out de novo sequencing of the greater amberjack genome to construct a reference genome sequence to identify single nucleotide polymorphisms (SNPs) for breeding amberjack by marker-assisted or gene-assisted selection as well as to identify functional genes for biological traits.
We obtained 200 times coverage and constructed a high-quality genome assembly using next generation sequencing technology.
The assembled sequences were aligned onto a yellowtail (Seriola quinqueradiata) radiation hybrid (RH) physical map by sequence homology.
A total of 215 of the longest amberjack sequences, with a total length of 622.8 Mbp (92% of the total length of the genome scaffolds), were lined up on the yellowtail RH map.
We resequenced the whole genomes of 20 greater amberjacks and mapped the resulting sequences onto the reference genome sequence.
About 186,000 nonredundant SNPs were successfully ordered on the reference genome.
Further, we found differences in the genome structural variations between two greater amberjack populations using BreakDancer.
We also analyzed the greater amberjack transcriptome and mapped the annotated sequences onto the reference genome sequence.
نمط استشهاد جمعية علماء النفس الأمريكية (APA)
Araki, Kazuo& Aokic, Jun-ya& Kawase, Junya& Hamada, Kazuhisa& Ozaki, Akiyuki& Fujimoto, Hiroshi…[et al.]. 2018. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. International Journal of Genomics،Vol. 2018, no. 2018, pp.1-12.
https://search.emarefa.net/detail/BIM-1172859
نمط استشهاد الجمعية الأمريكية للغات الحديثة (MLA)
Araki, Kazuo…[et al.]. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. International Journal of Genomics No. 2018 (2018), pp.1-12.
https://search.emarefa.net/detail/BIM-1172859
نمط استشهاد الجمعية الطبية الأمريكية (AMA)
Araki, Kazuo& Aokic, Jun-ya& Kawase, Junya& Hamada, Kazuhisa& Ozaki, Akiyuki& Fujimoto, Hiroshi…[et al.]. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. International Journal of Genomics. 2018. Vol. 2018, no. 2018, pp.1-12.
https://search.emarefa.net/detail/BIM-1172859
نوع البيانات
مقالات
لغة النص
الإنجليزية
الملاحظات
Includes bibliographical references
رقم السجل
BIM-1172859
قاعدة معامل التأثير والاستشهادات المرجعية العربي "ارسيف Arcif"
أضخم قاعدة بيانات عربية للاستشهادات المرجعية للمجلات العلمية المحكمة الصادرة في العالم العربي
تقوم هذه الخدمة بالتحقق من التشابه أو الانتحال في الأبحاث والمقالات العلمية والأطروحات الجامعية والكتب والأبحاث باللغة العربية، وتحديد درجة التشابه أو أصالة الأعمال البحثية وحماية ملكيتها الفكرية. تعرف اكثر