SubMito-PSPCP: Predicting Protein Submitochondrial Locations by Hybridizing Positional Specific Physicochemical Properties with Pseudoamino Acid Compositions
Joint Authors
Source
Issue
Vol. 2013, Issue 2013 (31 Dec. 2013), pp.1-7, 7 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2013-08-21
Country of Publication
Egypt
No. of Pages
7
Main Subjects
Abstract EN
Knowing the submitochondrial location of a mitochondrial protein is an important step in understanding its function.
We developed a new method for predicting protein submitochondrial locations by introducing a new concept: positional specific physicochemical properties.
With the framework of general form pseudoamino acid compositions, our method used only about 100 features to represent protein sequences, which is much simpler than the existing methods.
On the dataset of SubMito, our method achieved over 93% overall accuracy, with 98.60% for inner membrane, 93.90% for matrix, and 70.70% for outer membrane, which are comparable to all state-of-the-art methods.
As our method can be used as a general method to upgrade all pseudoamino-acid-composition-based methods, it should be very useful in future studies.
We implement our method as an online service: SubMito-PSPCP.
American Psychological Association (APA)
Du, Pufeng& Yu, Yuan. 2013. SubMito-PSPCP: Predicting Protein Submitochondrial Locations by Hybridizing Positional Specific Physicochemical Properties with Pseudoamino Acid Compositions. BioMed Research International،Vol. 2013, no. 2013, pp.1-7.
https://search.emarefa.net/detail/BIM-1003824
Modern Language Association (MLA)
Du, Pufeng& Yu, Yuan. SubMito-PSPCP: Predicting Protein Submitochondrial Locations by Hybridizing Positional Specific Physicochemical Properties with Pseudoamino Acid Compositions. BioMed Research International No. 2013 (2013), pp.1-7.
https://search.emarefa.net/detail/BIM-1003824
American Medical Association (AMA)
Du, Pufeng& Yu, Yuan. SubMito-PSPCP: Predicting Protein Submitochondrial Locations by Hybridizing Positional Specific Physicochemical Properties with Pseudoamino Acid Compositions. BioMed Research International. 2013. Vol. 2013, no. 2013, pp.1-7.
https://search.emarefa.net/detail/BIM-1003824
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1003824