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Designing a Bioengine for Detection and Analysis of Base String on an Affected Sequence in High-Concentration Regions
Joint Authors
Kim, Tai-hoon
Bhattacharyya, Debnath
Mandal, Bijoy Kumar
Source
Issue
Vol. 2013, Issue 2013 (31 Dec. 2013), pp.1-7, 7 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2013-08-13
Country of Publication
Egypt
No. of Pages
7
Main Subjects
Abstract EN
We design an Algorithm for bioengine.
As a program are enable optimal alignments searching between two sequences, the host sequence (normal plant) as well as query sequence (virus).
Searching for homologues has become a routine operation of biological sequences in 4 × 4 combination with different subsequence (word size).
This program takes the advantage of the high degree of homology between such sequences to construct an alignment of the matching regions.
There is a main aim which is to detect the overlapping reading frames.
This program also enables to find out the highly infected colones selection highest matching region with minimum gap or mismatch zones and unique virus colones matches.
This is a small, portable, interactive, front-end program intended to be used to find out the regions of matching between host sequence and query subsequences.
All the operations are carried out in fraction of seconds, depending on the required task and on the sequence length.
American Psychological Association (APA)
Bhattacharyya, Debnath& Mandal, Bijoy Kumar& Kim, Tai-hoon. 2013. Designing a Bioengine for Detection and Analysis of Base String on an Affected Sequence in High-Concentration Regions. BioMed Research International،Vol. 2013, no. 2013, pp.1-7.
https://search.emarefa.net/detail/BIM-1004132
Modern Language Association (MLA)
Bhattacharyya, Debnath…[et al.]. Designing a Bioengine for Detection and Analysis of Base String on an Affected Sequence in High-Concentration Regions. BioMed Research International No. 2013 (2013), pp.1-7.
https://search.emarefa.net/detail/BIM-1004132
American Medical Association (AMA)
Bhattacharyya, Debnath& Mandal, Bijoy Kumar& Kim, Tai-hoon. Designing a Bioengine for Detection and Analysis of Base String on an Affected Sequence in High-Concentration Regions. BioMed Research International. 2013. Vol. 2013, no. 2013, pp.1-7.
https://search.emarefa.net/detail/BIM-1004132
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1004132