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Cloud Prediction of Protein Structure and Function with PredictProtein for Debian
Joint Authors
Kaján, László
Yachdav, Guy
Vicedo, Esmeralda
Steinegger, Martin
Mirdita, Milot
Angermüller, Christof
Böhm, Ariane
Domke, Simon
Ertl, Julia
Mertes, Christian
Reisinger, Eva
Staniewski, Cedric
Rost, Burkhard
Source
Issue
Vol. 2013, Issue 2013 (31 Dec. 2013), pp.1-6, 6 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2013-07-17
Country of Publication
Egypt
No. of Pages
6
Main Subjects
Abstract EN
We report the release of PredictProtein for the Debian operating system and derivatives, such as Ubuntu, Bio-Linux, and Cloud BioLinux.
The PredictProtein suite is available as a standard set of open source Debian packages.
The release covers the most popular prediction methods from the Rost Lab, including methods for the prediction of secondary structure and solvent accessibility (profphd), nuclear localization signals (predictnls), and intrinsically disordered regions (norsnet).
We also present two case studies that successfully utilize PredictProtein packages for high performance computing in the cloud: the first analyzes protein disorder for whole organisms, and the second analyzes the effect of all possible single sequence variants in protein coding regions of the human genome.
American Psychological Association (APA)
Kaján, László& Yachdav, Guy& Vicedo, Esmeralda& Steinegger, Martin& Mirdita, Milot& Angermüller, Christof…[et al.]. 2013. Cloud Prediction of Protein Structure and Function with PredictProtein for Debian. BioMed Research International،Vol. 2013, no. 2013, pp.1-6.
https://search.emarefa.net/detail/BIM-1004214
Modern Language Association (MLA)
Kaján, László…[et al.]. Cloud Prediction of Protein Structure and Function with PredictProtein for Debian. BioMed Research International No. 2013 (2013), pp.1-6.
https://search.emarefa.net/detail/BIM-1004214
American Medical Association (AMA)
Kaján, László& Yachdav, Guy& Vicedo, Esmeralda& Steinegger, Martin& Mirdita, Milot& Angermüller, Christof…[et al.]. Cloud Prediction of Protein Structure and Function with PredictProtein for Debian. BioMed Research International. 2013. Vol. 2013, no. 2013, pp.1-6.
https://search.emarefa.net/detail/BIM-1004214
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1004214