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Inferring Phylogenetic Networks from Gene Order Data
Joint Authors
Morozov, Alexey Anatolievich
Galachyants, Yuri Pavlovich
Likhoshway, Yelena Valentinovna
Source
Issue
Vol. 2013, Issue 2013 (31 Dec. 2013), pp.1-7, 7 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2013-08-28
Country of Publication
Egypt
No. of Pages
7
Main Subjects
Abstract EN
Existing algorithms allow us to infer phylogenetic networks from sequences (DNA, protein or binary), sets of trees, and distance matrices, but there are no methods to build them using the gene order data as an input.
Here we describe several methods to build split networks from the gene order data, perform simulation studies, and use our methods for analyzing and interpreting different real gene order datasets.
All proposed methods are based on intermediate data, which can be generated from genome structures under study and used as an input for network construction algorithms.
Three intermediates are used: set of jackknife trees, distance matrix, and binary encoding.
According to simulations and case studies, the best intermediates are jackknife trees and distance matrix (when used with Neighbor-Net algorithm).
Binary encoding can also be useful, but only when the methods mentioned above cannot be used.
American Psychological Association (APA)
Morozov, Alexey Anatolievich& Galachyants, Yuri Pavlovich& Likhoshway, Yelena Valentinovna. 2013. Inferring Phylogenetic Networks from Gene Order Data. BioMed Research International،Vol. 2013, no. 2013, pp.1-7.
https://search.emarefa.net/detail/BIM-1004469
Modern Language Association (MLA)
Morozov, Alexey Anatolievich…[et al.]. Inferring Phylogenetic Networks from Gene Order Data. BioMed Research International No. 2013 (2013), pp.1-7.
https://search.emarefa.net/detail/BIM-1004469
American Medical Association (AMA)
Morozov, Alexey Anatolievich& Galachyants, Yuri Pavlovich& Likhoshway, Yelena Valentinovna. Inferring Phylogenetic Networks from Gene Order Data. BioMed Research International. 2013. Vol. 2013, no. 2013, pp.1-7.
https://search.emarefa.net/detail/BIM-1004469
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1004469