Identification of Protein Coding Regions in the Eukaryotic DNA Sequences Based on Marple Algorithm and Wavelet Packets Transform
Joint Authors
Source
Issue
Vol. 2014, Issue 2014 (31 Dec. 2014), pp.1-14, 14 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2014-07-15
Country of Publication
Egypt
No. of Pages
14
Main Subjects
Abstract EN
The identification of protein coding regions (exons) plays a critical role in eukaryotic gene structure prediction.
Many techniques have been introduced for discriminating between the exons and the introns in the eukaryotic DNA sequences, such as the discrete Fourier transform (DFT) based techniques, but these DFT-based methods rapidly lose their effectiveness in the case of short DNA sequences.
In this paper, a novel integrated algorithm based on autoregressive spectrum analysis and wavelet packets transform is presented to improve the efficiency and accuracy of the coding regions identification.
The experimental results show that the new algorithm outperforms the conventional DFT-based approaches in improving the prediction accuracy of protein coding regions distinctly by testing GENSCAN65, HMR195, and BG570 benchmark datasets.
American Psychological Association (APA)
Liu, Guangchen& Luan, Yihui. 2014. Identification of Protein Coding Regions in the Eukaryotic DNA Sequences Based on Marple Algorithm and Wavelet Packets Transform. Abstract and Applied Analysis،Vol. 2014, no. 2014, pp.1-14.
https://search.emarefa.net/detail/BIM-1013866
Modern Language Association (MLA)
Liu, Guangchen& Luan, Yihui. Identification of Protein Coding Regions in the Eukaryotic DNA Sequences Based on Marple Algorithm and Wavelet Packets Transform. Abstract and Applied Analysis No. 2014 (2014), pp.1-14.
https://search.emarefa.net/detail/BIM-1013866
American Medical Association (AMA)
Liu, Guangchen& Luan, Yihui. Identification of Protein Coding Regions in the Eukaryotic DNA Sequences Based on Marple Algorithm and Wavelet Packets Transform. Abstract and Applied Analysis. 2014. Vol. 2014, no. 2014, pp.1-14.
https://search.emarefa.net/detail/BIM-1013866
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1013866