FACC: A Novel Finite Automaton Based on Cloud Computing for the Multiple Longest Common Subsequences Search
Joint Authors
Wang, Yuping
Li, Yanni
Bao, Liang
Source
Mathematical Problems in Engineering
Issue
Vol. 2012, Issue 2012 (31 Dec. 2012), pp.1-17, 17 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2012-10-30
Country of Publication
Egypt
No. of Pages
17
Main Subjects
Abstract EN
Searching for the multiple longest common subsequences (MLCS) has significant applications in the areas of bioinformatics, information processing, and data mining, and so forth, Although a few parallel MLCS algorithms have been proposed, the efficiency and effectiveness of the algorithms are not satisfactory with the increasing complexity and size of biologic data.
To overcome the shortcomings of the existing MLCS algorithms, and considering that MapReduce parallel framework of cloud computing being a promising technology for cost-effective high performance parallel computing, a novel finite automaton (FA) based on cloud computing called FACC is proposed under MapReduce parallel framework, so as to exploit a more efficient and effective general parallel MLCS algorithm.
FACC adopts the ideas of matched pairs and finite automaton by preprocessing sequences, constructing successor tables, and common subsequences finite automaton to search for MLCS.
Simulation experiments on a set of benchmarks from both real DNA and amino acid sequences have been conducted and the results show that the proposed FACC algorithm outperforms the current leading parallel MLCS algorithm FAST-MLCS.
American Psychological Association (APA)
Li, Yanni& Wang, Yuping& Bao, Liang. 2012. FACC: A Novel Finite Automaton Based on Cloud Computing for the Multiple Longest Common Subsequences Search. Mathematical Problems in Engineering،Vol. 2012, no. 2012, pp.1-17.
https://search.emarefa.net/detail/BIM-1029532
Modern Language Association (MLA)
Li, Yanni…[et al.]. FACC: A Novel Finite Automaton Based on Cloud Computing for the Multiple Longest Common Subsequences Search. Mathematical Problems in Engineering No. 2012 (2012), pp.1-17.
https://search.emarefa.net/detail/BIM-1029532
American Medical Association (AMA)
Li, Yanni& Wang, Yuping& Bao, Liang. FACC: A Novel Finite Automaton Based on Cloud Computing for the Multiple Longest Common Subsequences Search. Mathematical Problems in Engineering. 2012. Vol. 2012, no. 2012, pp.1-17.
https://search.emarefa.net/detail/BIM-1029532
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1029532