De Novo Assembly and Comparative Transcriptome Analysis Provide Insight into Lysine Biosynthesis in Toona sinensis Roem
Joint Authors
Zhang, Xia
Song, Zhenqiao
Liu, Tian
Guo, Linlin
Li, Xingfeng
Source
International Journal of Genomics
Issue
Vol. 2016, Issue 2016 (31 Dec. 2016), pp.1-9, 9 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2016-06-07
Country of Publication
Egypt
No. of Pages
9
Main Subjects
Abstract EN
Toona sinensis Roem is a popular leafy vegetable in Chinese cuisine and is also used as a traditional Chinese medicine.
In this study, leaf samples were collected from the same plant on two development stages and then used for high-throughput Illumina RNA-sequencing (RNA-Seq).
125,884 transcripts and 54,628 unigenes were obtained through de novo assembly.
A total of 25,570 could be annotated with known biological functions, which indicated that the T.
sinensis leaves and shoots were undergoing multiple developmental processes especially for active metabolic processes.
Analysis of differentially expressed unigenes between the two libraries showed that the lysine biosynthesis was an enriched KEGG pathway, and candidate genes involved in the lysine biosynthesis pathway in T.
sinensis leaves and shoots were identified.
Our results provide a primary analysis of the gene expression files of T.
sinensis leaf and shoot on different development stages and afford a valuable resource for genetic and genomic research on plant lysine biosynthesis.
American Psychological Association (APA)
Zhang, Xia& Song, Zhenqiao& Liu, Tian& Guo, Linlin& Li, Xingfeng. 2016. De Novo Assembly and Comparative Transcriptome Analysis Provide Insight into Lysine Biosynthesis in Toona sinensis Roem. International Journal of Genomics،Vol. 2016, no. 2016, pp.1-9.
https://search.emarefa.net/detail/BIM-1106176
Modern Language Association (MLA)
Zhang, Xia…[et al.]. De Novo Assembly and Comparative Transcriptome Analysis Provide Insight into Lysine Biosynthesis in Toona sinensis Roem. International Journal of Genomics No. 2016 (2016), pp.1-9.
https://search.emarefa.net/detail/BIM-1106176
American Medical Association (AMA)
Zhang, Xia& Song, Zhenqiao& Liu, Tian& Guo, Linlin& Li, Xingfeng. De Novo Assembly and Comparative Transcriptome Analysis Provide Insight into Lysine Biosynthesis in Toona sinensis Roem. International Journal of Genomics. 2016. Vol. 2016, no. 2016, pp.1-9.
https://search.emarefa.net/detail/BIM-1106176
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1106176