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Genome-Wide Identification of Putative MicroRNAs in Cassava (Manihot esculenta Crantz) and Their Functional Landscape in Cellular Regulation
Joint Authors
Yawichai, Amika
Kalapanulak, Saowalak
Thammarongtham, Chinae
Saithong, Treenut
Source
Issue
Vol. 2019, Issue 2019 (31 Dec. 2019), pp.1-16, 16 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2019-06-19
Country of Publication
Egypt
No. of Pages
16
Main Subjects
Abstract EN
MicroRNAs are small noncoding RNAs, involved in the regulation of many cellular processes in plants.
Hundreds of miRNAs have been identified in cassava by various techniques, yet these identifications were constrained by a lack of miRNA templates and the narrow range of conditions in transcriptome study.
In this research, we conducted genome-wide analysis identification, whereby miRNAs from cassava genome were thoroughly screened using bioinformatics approach independent of predefined templates and studied conditions.
Our work provided a catalog of putative mature miRNAs and explored the landscape of miRNAome in cassava.
These putative miRNAs were validated using statistical analysis as well as available cassava expression data.
We showed that the crowded locations of cassava miRNAs are consistent with other plants and animals and hypothesized to have the same evolutionary origin.
At least 10 conserved miRNAs were identified in cassava based on the comparative study of miRNA conservation.
Finally, investigation of miRNAs and target gene relationships enabled us to envisage the complexities of cellular regulatory systems modulated at posttranscriptional level.
American Psychological Association (APA)
Yawichai, Amika& Kalapanulak, Saowalak& Thammarongtham, Chinae& Saithong, Treenut. 2019. Genome-Wide Identification of Putative MicroRNAs in Cassava (Manihot esculenta Crantz) and Their Functional Landscape in Cellular Regulation. BioMed Research International،Vol. 2019, no. 2019, pp.1-16.
https://search.emarefa.net/detail/BIM-1123614
Modern Language Association (MLA)
Yawichai, Amika…[et al.]. Genome-Wide Identification of Putative MicroRNAs in Cassava (Manihot esculenta Crantz) and Their Functional Landscape in Cellular Regulation. BioMed Research International No. 2019 (2019), pp.1-16.
https://search.emarefa.net/detail/BIM-1123614
American Medical Association (AMA)
Yawichai, Amika& Kalapanulak, Saowalak& Thammarongtham, Chinae& Saithong, Treenut. Genome-Wide Identification of Putative MicroRNAs in Cassava (Manihot esculenta Crantz) and Their Functional Landscape in Cellular Regulation. BioMed Research International. 2019. Vol. 2019, no. 2019, pp.1-16.
https://search.emarefa.net/detail/BIM-1123614
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1123614