In Silico Genome-Wide Analysis of the ATP-Binding Cassette Transporter Gene Family in Soybean (Glycine max L.) and Their Expression Profiling
Joint Authors
Baek, Kwang-Hyun
Mishra, Awdhesh Kumar
Choi, Jinhee
Rabbee, Muhammad Fazle
Source
Issue
Vol. 2019, Issue 2019 (31 Dec. 2019), pp.1-14, 14 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2019-01-10
Country of Publication
Egypt
No. of Pages
14
Main Subjects
Abstract EN
ATP-binding cassette (ABC) transporters constitute one of the largest gene families in all living organisms, most of which mediate transport across biological membranes by hydrolyzing ATP.
However, detailed studies of ABC transporter genes in the important oil crop, soybean, are still lacking.
In the present study, we carried out genome-wide identification and phylogenetic and transcriptional analyses of the ABC gene family in G.
max.
A total of 261 G.
max ABC (GmABCs) genes were identified and unevenly localized onto 20 chromosomes.
Referring to protein-domain orientation and phylogeny, the GmABC family could be classified into eight (ABCA-ABCG and ABCI) subfamilies and ABCG were the most abundantly present.
Further, investigation of whole genome duplication (WGD) signifies the role of segmental duplication in the expansion of the ABC transporter gene family in soybean.
The Ka/Ks ratio indicates that several duplicated genes are governed by intense purifying selection during evolution.
In addition, in silico expression analysis based on RNA-sequence using publicly available database revealed that ABC transporters are differentially expressed in tissues and developmental stages and in dehydration.
Overall, we provide an extensive overview of the GmABC transporter gene family and it promises the primary basis for the study in development and response to dehydration tolerance.
American Psychological Association (APA)
Mishra, Awdhesh Kumar& Choi, Jinhee& Rabbee, Muhammad Fazle& Baek, Kwang-Hyun. 2019. In Silico Genome-Wide Analysis of the ATP-Binding Cassette Transporter Gene Family in Soybean (Glycine max L.) and Their Expression Profiling. BioMed Research International،Vol. 2019, no. 2019, pp.1-14.
https://search.emarefa.net/detail/BIM-1127750
Modern Language Association (MLA)
Mishra, Awdhesh Kumar…[et al.]. In Silico Genome-Wide Analysis of the ATP-Binding Cassette Transporter Gene Family in Soybean (Glycine max L.) and Their Expression Profiling. BioMed Research International No. 2019 (2019), pp.1-14.
https://search.emarefa.net/detail/BIM-1127750
American Medical Association (AMA)
Mishra, Awdhesh Kumar& Choi, Jinhee& Rabbee, Muhammad Fazle& Baek, Kwang-Hyun. In Silico Genome-Wide Analysis of the ATP-Binding Cassette Transporter Gene Family in Soybean (Glycine max L.) and Their Expression Profiling. BioMed Research International. 2019. Vol. 2019, no. 2019, pp.1-14.
https://search.emarefa.net/detail/BIM-1127750
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1127750