Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps

Abstract EN

Cryo-electron microscopy (cryo-EM) has produced density maps of various resolutions.

Although α-helices can be detected from density maps at 5–8 Å resolutions, β-strands are challenging to detect at such density maps due to close-spacing of β-strands.

The variety of shapes of β-sheets adds the complexity of β-strands detection from density maps.

We propose a new approach to model traces of β-strands for β-barrel density regions that are extracted from cryo-EM density maps.

In the test containing eight β-barrels extracted from experimental cryo-EM density maps at 5.5 Å–8.25 Å resolution, StrandRoller detected about 74.26% of the amino acids in the β-strands with an overall 2.05 Å 2-way distance between the detected β-traces and the observed ones, if the best of the fifteen detection cases is considered.