Construction and Validation of Predictive Model to Identify Critical Genes Associated with Advanced Kidney Disease
Joint Authors
Zhang, Wenlong
Zhang, Xiaofei
Xin, Guangda
Zhou, Guangyu
Source
International Journal of Genomics
Issue
Vol. 2020, Issue 2020 (31 Dec. 2020), pp.1-12, 12 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2020-11-12
Country of Publication
Egypt
No. of Pages
12
Main Subjects
Abstract EN
Background.
Chronic kidney disease (CKD) is characterized by progressive renal function loss, which may finally lead to end-stage renal disease (ESRD).
The study is aimed at identifying crucial genes related to CKD progressive and constructing a disease prediction model to investigate risk factors.
Methods.
GSE97709 and GSE37171 datasets were downloaded from the GEO database including peripheral blood samples from subjects with CKD, ESRD, and healthy controls.
Differential expressed genes (DEGs) were identified and functional enrichment analysis.
Machine learning algorithm-based prediction model was constructed to identify crucial functional feature genes related to ESRD.
Results.
A total of 76 DEGs were screened from CDK vs.
normal samples while 10,114 DEGs were identified from ESRD vs.
CDK samples.
For numerous genes related to ESRD, several GO biological terms and 141 signaling pathways were identified including markedly upregulated olfactory transduction and downregulated platelet activation pathway.
The DEGs were clustering in three modules according to WGCNA access, namely, ME1, ME2, and ME3.
By construction of the XGBoost model and dataset validation, we screened cohorts of genes associated with progressive CKD, such as FZD10, FOXD4, and FAM215A.
FZD10 represented the highest score (F score = 21) in predictive model.
Conclusion.
Our results demonstrated that FZD10, FOXD4, PPP3R1, and UCP2 might be critical genes in CKD progression.
American Psychological Association (APA)
Xin, Guangda& Zhou, Guangyu& Zhang, Wenlong& Zhang, Xiaofei. 2020. Construction and Validation of Predictive Model to Identify Critical Genes Associated with Advanced Kidney Disease. International Journal of Genomics،Vol. 2020, no. 2020, pp.1-12.
https://search.emarefa.net/detail/BIM-1171310
Modern Language Association (MLA)
Xin, Guangda…[et al.]. Construction and Validation of Predictive Model to Identify Critical Genes Associated with Advanced Kidney Disease. International Journal of Genomics No. 2020 (2020), pp.1-12.
https://search.emarefa.net/detail/BIM-1171310
American Medical Association (AMA)
Xin, Guangda& Zhou, Guangyu& Zhang, Wenlong& Zhang, Xiaofei. Construction and Validation of Predictive Model to Identify Critical Genes Associated with Advanced Kidney Disease. International Journal of Genomics. 2020. Vol. 2020, no. 2020, pp.1-12.
https://search.emarefa.net/detail/BIM-1171310
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1171310