Chromosome Visualization Tool : A Whole Genome Viewer
Joint Authors
Cannon, Steven B.
Cannon, Ethalinda K. S.
Source
International Journal of Plant Genomics
Issue
Vol. 2011, Issue 2011 (31 Dec. 2011), pp.1-4, 4 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2011-12-19
Country of Publication
Egypt
No. of Pages
4
Main Subjects
Abstract EN
CViT (chromosome visualization tool) is a Perl utility for quickly generating images of features on a whole genome at once.
It reads GFF3-formated data representing chromosomes (linkage groups or pseudomolecules) and sets of features on those chromosomes.
It can display features on any chromosomal unit system, including genetic (centimorgan), cytological (centiMcClintock), and DNA unit (base-pair) coordinates.
CViT has been used to track sequencing progress (status of genome sequencing, location and number of gaps), to visualize BLAST hits on a whole genome view, to associate maps with one another, to locate regions of repeat densities to display syntenic regions, and to visualize centromeres and knobs on chromosomes.
American Psychological Association (APA)
Cannon, Ethalinda K. S.& Cannon, Steven B.. 2011. Chromosome Visualization Tool : A Whole Genome Viewer. International Journal of Plant Genomics،Vol. 2011, no. 2011, pp.1-4.
https://search.emarefa.net/detail/BIM-466970
Modern Language Association (MLA)
Cannon, Ethalinda K. S.& Cannon, Steven B.. Chromosome Visualization Tool : A Whole Genome Viewer. International Journal of Plant Genomics No. 2011 (2011), pp.1-4.
https://search.emarefa.net/detail/BIM-466970
American Medical Association (AMA)
Cannon, Ethalinda K. S.& Cannon, Steven B.. Chromosome Visualization Tool : A Whole Genome Viewer. International Journal of Plant Genomics. 2011. Vol. 2011, no. 2011, pp.1-4.
https://search.emarefa.net/detail/BIM-466970
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-466970