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Open Reading Frame Phylogenetic Analysis on the Cloud
Joint Authors
Source
International Journal of Genomics
Issue
Vol. 2013, Issue 2013 (31 Dec. 2013), pp.1-9, 9 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2013-03-31
Country of Publication
Egypt
No. of Pages
9
Main Subjects
Natural & Life Sciences (Multidisciplinary)
Biology
Abstract EN
Phylogenetic analysis has become essential in researching the evolutionary relationships between viruses.
These relationships are depicted on phylogenetic trees, in which viruses are grouped based on sequence similarity.
Viral evolutionary relationships are identified from open reading frames rather than from complete sequences.
Recently, cloud computing has become popular for developing internet-based bioinformatics tools.
Biocloud is an efficient, scalable, and robust bioinformatics computing service.
In this paper, we propose a cloud-based open reading frame phylogenetic analysis service.
The proposed service integrates the Hadoop framework, virtualization technology, and phylogenetic analysis methods to provide a high-availability, large-scale bioservice.
In a case study, we analyze the phylogenetic relationships among Norovirus.
Evolutionary relationships are elucidated by aligning different open reading frame sequences.
The proposed platform correctly identifies the evolutionary relationships between members of Norovirus.
American Psychological Association (APA)
Hung, Che-Lun& Lin, Chun-Yuan. 2013. Open Reading Frame Phylogenetic Analysis on the Cloud. International Journal of Genomics،Vol. 2013, no. 2013, pp.1-9.
https://search.emarefa.net/detail/BIM-485282
Modern Language Association (MLA)
Hung, Che-Lun& Lin, Chun-Yuan. Open Reading Frame Phylogenetic Analysis on the Cloud. International Journal of Genomics No. 2013 (2013), pp.1-9.
https://search.emarefa.net/detail/BIM-485282
American Medical Association (AMA)
Hung, Che-Lun& Lin, Chun-Yuan. Open Reading Frame Phylogenetic Analysis on the Cloud. International Journal of Genomics. 2013. Vol. 2013, no. 2013, pp.1-9.
https://search.emarefa.net/detail/BIM-485282
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-485282