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A Novel msDNA (Multicopy Single-Stranded DNA) Strain Present in Yersinia frederiksenii ATCC 33641 Contig01029 Enteropathogenic Bacteria with the Genomic Analysis of It's Retron
Joint Authors
Shimamoto, Tadashi
Das, Rasel
Arifuzzaman, Md.
Source
Issue
Vol. 2011, Issue 2011 (31 Dec. 2011), pp.1-6, 6 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2011-11-17
Country of Publication
Egypt
No. of Pages
6
Main Subjects
Abstract EN
Retron is a retroelement that encodes msDNA (multicopy single-stranded DNA) which was significantly found mainly in Gram-negative pathogenic bacteria.
We screened Yersinia frederiksenii ATCC 33641 contig01029 for the presence of retroelement by using bioinformatics tools and characterized a novel retron-Yf79 on the chromosome that encodes msDNA-Yf79.
In this study, we perceived that, the codon usage of retron-Yf79 were noteworthy different from those of the Y.
frederiksenii genome.
It demonstrates that, the retron-Yf79 was a foreign DNA element and integrated into this organism genome during their evolution.
In addition to this, we have observed a transposase gene which is located just downstream of retron-Yf79.
So, the enzyme might be responsible for the transposition of this novel retron element.
American Psychological Association (APA)
Das, Rasel& Shimamoto, Tadashi& Arifuzzaman, Md.. 2011. A Novel msDNA (Multicopy Single-Stranded DNA) Strain Present in Yersinia frederiksenii ATCC 33641 Contig01029 Enteropathogenic Bacteria with the Genomic Analysis of It's Retron. Journal of Pathogens،Vol. 2011, no. 2011, pp.1-6.
https://search.emarefa.net/detail/BIM-491125
Modern Language Association (MLA)
Das, Rasel…[et al.]. A Novel msDNA (Multicopy Single-Stranded DNA) Strain Present in Yersinia frederiksenii ATCC 33641 Contig01029 Enteropathogenic Bacteria with the Genomic Analysis of It's Retron. Journal of Pathogens No. 2011 (2011), pp.1-6.
https://search.emarefa.net/detail/BIM-491125
American Medical Association (AMA)
Das, Rasel& Shimamoto, Tadashi& Arifuzzaman, Md.. A Novel msDNA (Multicopy Single-Stranded DNA) Strain Present in Yersinia frederiksenii ATCC 33641 Contig01029 Enteropathogenic Bacteria with the Genomic Analysis of It's Retron. Journal of Pathogens. 2011. Vol. 2011, no. 2011, pp.1-6.
https://search.emarefa.net/detail/BIM-491125
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-491125