Electric LAMP : Virtual Loop-Mediated Isothermal AMPlification
Joint Authors
Salinas, Nelson R.
Little, Damon P.
Source
Issue
Vol. 2012, Issue 2012 (31 Dec. 2012), pp.1-5, 5 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2012-11-21
Country of Publication
Egypt
No. of Pages
5
Main Subjects
Abstract EN
We present eLAMP, a PERL script, with Tk graphical interface, that electronically simulates Loop-mediated AMPlification (LAMP) allowing users to efficiently test putative LAMP primers on a set of target sequences.
eLAMP can match primers to templates using either exact (via builtin PERL regular expressions) or approximate matching (via the tre-agrep library).
Performance was tested on 40 whole genome sequences of Staphylococcus.
eLAMP correctly predicted that the two tested primer sets would amplify from S.
aureus genomes and not amplify from other Staphylococcus species.
Open source (GNU Public License) PERL scripts are available for download from the New York Botanical Garden's website.
American Psychological Association (APA)
Salinas, Nelson R.& Little, Damon P.. 2012. Electric LAMP : Virtual Loop-Mediated Isothermal AMPlification. ISRN Bioinformatics،Vol. 2012, no. 2012, pp.1-5.
https://search.emarefa.net/detail/BIM-491385
Modern Language Association (MLA)
Salinas, Nelson R.& Little, Damon P.. Electric LAMP : Virtual Loop-Mediated Isothermal AMPlification. ISRN Bioinformatics No. 2012 (2012), pp.1-5.
https://search.emarefa.net/detail/BIM-491385
American Medical Association (AMA)
Salinas, Nelson R.& Little, Damon P.. Electric LAMP : Virtual Loop-Mediated Isothermal AMPlification. ISRN Bioinformatics. 2012. Vol. 2012, no. 2012, pp.1-5.
https://search.emarefa.net/detail/BIM-491385
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-491385