Comparative Analysis of Glycogene Expression in Different Mouse Tissues Using RNA-Seq Data
Joint Authors
Jha, Vivekanand
Malik, Adeel
Singh, Sanjay Kumar
Firoz, Ahmad
Ali, Amjad
Source
International Journal of Genomics
Issue
Vol. 2014, Issue 2014 (31 Dec. 2014), pp.1-18, 18 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2014-07-09
Country of Publication
Egypt
No. of Pages
18
Main Subjects
Natural & Life Sciences (Multidisciplinary)
Biology
Abstract EN
Glycogenes regulate a wide array of biological processes in the development of organisms as well as different diseases such as cancer, primary open-angle glaucoma, and renal dysfunction.
The objective of this study was to explore the role of differentially expressed glycogenes (DEGGs) in three major tissues such as brain, muscle, and liver using mouse RNA-seq data, and we identified 579, 501, and 442 DEGGs for brain versus liver (BvL579), brain versus muscle (BvM501), and liver versus muscle (LvM442) groups.
DAVID functional analysis suggested inflammatory response, glycosaminoglycan metabolic process, and protein maturation as the enriched biological processes in BvL579, BvM501, and LvM442, respectively.
These DEGGs were then used to construct three interaction networks by using GeneMANIA, from which we detected potential hub genes such as PEMT and HPXN (BvL579), IGF2 and NID2 (BvM501), and STAT6 and FLT1 (LvM442), having the highest degree.
Additionally, our community analysis results suggest that the significance of immune system related processes in liver, glycosphingolipid metabolic processes in the development of brain, and the processes such as cell proliferation, adhesion, and growth are important for muscle development.
Further studies are required to confirm the role of predicted hub genes as well as the significance of biological processes.
American Psychological Association (APA)
Firoz, Ahmad& Malik, Adeel& Singh, Sanjay Kumar& Jha, Vivekanand& Ali, Amjad. 2014. Comparative Analysis of Glycogene Expression in Different Mouse Tissues Using RNA-Seq Data. International Journal of Genomics،Vol. 2014, no. 2014, pp.1-18.
https://search.emarefa.net/detail/BIM-502102
Modern Language Association (MLA)
Firoz, Ahmad…[et al.]. Comparative Analysis of Glycogene Expression in Different Mouse Tissues Using RNA-Seq Data. International Journal of Genomics No. 2014 (2014), pp.1-18.
https://search.emarefa.net/detail/BIM-502102
American Medical Association (AMA)
Firoz, Ahmad& Malik, Adeel& Singh, Sanjay Kumar& Jha, Vivekanand& Ali, Amjad. Comparative Analysis of Glycogene Expression in Different Mouse Tissues Using RNA-Seq Data. International Journal of Genomics. 2014. Vol. 2014, no. 2014, pp.1-18.
https://search.emarefa.net/detail/BIM-502102
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-502102