![](/images/graphics-bg.png)
Applying Small-Scale DNA Signatures as an Aid in Assembling Soybean Chromosome Sequences
Joint Authors
Peto, Myron
Shoemaker, Randy C.
Cannon, Steven B.
Grant, David M.
Source
Issue
Vol. 2010, Issue 2010 (31 Dec. 2010), pp.1-7, 7 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2010-08-19
Country of Publication
Egypt
No. of Pages
7
Main Subjects
Natural & Life Sciences (Multidisciplinary)
Biology
Abstract EN
Previous work has established a genomic signature based on relative counts of the 16 possible dinucleotides.
Until now, it has been generally accepted that the dinucleotide signature is characteristic of a genome and is relatively homogeneous across a genome.
However, we found some local regions of the soybean genome with a signature differing widely from that of the rest of the genome.
Those regions were mostly centromeric and pericentromeric, and enriched for repetitive sequences.
We found that DNA binding energy also presented large-scale patterns across soybean chromosomes.
These two patterns were helpful during assembly and quality control of soybean whole genome shotgun scaffold sequences into chromosome pseudomolecules.
American Psychological Association (APA)
Peto, Myron& Grant, David M.& Shoemaker, Randy C.& Cannon, Steven B.. 2010. Applying Small-Scale DNA Signatures as an Aid in Assembling Soybean Chromosome Sequences. Advances in Bioinformatics،Vol. 2010, no. 2010, pp.1-7.
https://search.emarefa.net/detail/BIM-512976
Modern Language Association (MLA)
Peto, Myron…[et al.]. Applying Small-Scale DNA Signatures as an Aid in Assembling Soybean Chromosome Sequences. Advances in Bioinformatics No. 2010 (2010), pp.1-7.
https://search.emarefa.net/detail/BIM-512976
American Medical Association (AMA)
Peto, Myron& Grant, David M.& Shoemaker, Randy C.& Cannon, Steven B.. Applying Small-Scale DNA Signatures as an Aid in Assembling Soybean Chromosome Sequences. Advances in Bioinformatics. 2010. Vol. 2010, no. 2010, pp.1-7.
https://search.emarefa.net/detail/BIM-512976
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-512976