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ProGeRF: Proteome and Genome Repeat Finder Utilizing a Fast Parallel Hash Function
Joint Authors
Lopes, Robson da Silva
Moraes, Walas Jhony Lopes
Rodrigues, Thiago de Souza
Bartholomeu, Daniella Castanheira
Source
Issue
Vol. 2015, Issue 2015 (31 Dec. 2015), pp.1-9, 9 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2015-02-25
Country of Publication
Egypt
No. of Pages
9
Main Subjects
Abstract EN
Repetitive element sequences are adjacent, repeating patterns, also called motifs, and can be of different lengths; repetitions can involve their exact or approximate copies.
They have been widely used as molecular markers in populationbiology.
Given the sizes of sequenced genomes, various bioinformatics tools have been developed for the extraction of repetitive elements from DNA sequences.
However, currently available tools do not provide options for identifying repetitive elements in the genome or proteome, displaying a user-friendly web interface, and performing-exhaustive searches.
ProGeRF is a web site for extracting repetitive regions from genome and proteome sequences.
It was designed to be efficient, fast, and accurate andprimarily user-friendly web tool allowing many ways to view and analyse the results.
ProGeRF (Proteome and Genome Repeat Finder) is freely available as a stand-alone program, from which the users can download the source code, and as a web tool.
It was developed using the hash table approach to extract perfect and imperfect repetitive regions in a (multi)FASTA file, while allowing a linear time complexity.
American Psychological Association (APA)
Lopes, Robson da Silva& Moraes, Walas Jhony Lopes& Rodrigues, Thiago de Souza& Bartholomeu, Daniella Castanheira. 2015. ProGeRF: Proteome and Genome Repeat Finder Utilizing a Fast Parallel Hash Function. BioMed Research International،Vol. 2015, no. 2015, pp.1-9.
https://search.emarefa.net/detail/BIM-1055308
Modern Language Association (MLA)
Lopes, Robson da Silva…[et al.]. ProGeRF: Proteome and Genome Repeat Finder Utilizing a Fast Parallel Hash Function. BioMed Research International No. 2015 (2015), pp.1-9.
https://search.emarefa.net/detail/BIM-1055308
American Medical Association (AMA)
Lopes, Robson da Silva& Moraes, Walas Jhony Lopes& Rodrigues, Thiago de Souza& Bartholomeu, Daniella Castanheira. ProGeRF: Proteome and Genome Repeat Finder Utilizing a Fast Parallel Hash Function. BioMed Research International. 2015. Vol. 2015, no. 2015, pp.1-9.
https://search.emarefa.net/detail/BIM-1055308
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1055308