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A Genomic Study of DNA Alteration Events Caused by Ionizing Radiation in Human Embryonic Stem Cells via Next-Generation Sequencing
Joint Authors
Panyutin, Igor G.
Panyutin, Irina V.
Nguyen, Van
Neumann, Ronald D.
Source
Issue
Vol. 2016, Issue 2016 (31 Dec. 2015), pp.1-7, 7 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2015-11-22
Country of Publication
Egypt
No. of Pages
7
Abstract EN
Ionizing radiation (IR) is a known mutagen that is widely employed for medical diagnostic and therapeutic purposes.
To study the extent of genetic variations in DNA caused by IR, we used IR-sensitive human embryonic stem cells (hESCs).
Four hESC cell lines, H1, H7, H9, and H14, were subjected to IR at 0.2 or 1 Gy dose and then maintained in culture for four days before being harvested for DNA isolation.
Irradiation with 1 Gy dose resulted in significant cell death, ranging from 60% to 90% reduction in cell population.
Since IR is often implicated as a risk for inducing cancer, a primer pool targeting genomic “hotspot” regions that are frequently mutated in human cancer genes was used to generate libraries from irradiated and control samples.
Using a semiconductor-based next-generation sequencing approach, we were able to consistently sequence these samples with deep coverage for reliable data analysis.
A possible rare nucleotide variant was identified in the KIT gene (chr4:55593481) exclusively in H1 hESCs irradiated with 1 Gy dose.
More extensive further studies are warranted to assess the extent and distribution of genetic changes in hESCs after IR exposure.
American Psychological Association (APA)
Nguyen, Van& Panyutin, Irina V.& Panyutin, Igor G.& Neumann, Ronald D.. 2015. A Genomic Study of DNA Alteration Events Caused by Ionizing Radiation in Human Embryonic Stem Cells via Next-Generation Sequencing. Stem Cells International،Vol. 2016, no. 2016, pp.1-7.
https://search.emarefa.net/detail/BIM-1116008
Modern Language Association (MLA)
Nguyen, Van…[et al.]. A Genomic Study of DNA Alteration Events Caused by Ionizing Radiation in Human Embryonic Stem Cells via Next-Generation Sequencing. Stem Cells International Vol. 2016, no. 2016 (2015), pp.1-7.
https://search.emarefa.net/detail/BIM-1116008
American Medical Association (AMA)
Nguyen, Van& Panyutin, Irina V.& Panyutin, Igor G.& Neumann, Ronald D.. A Genomic Study of DNA Alteration Events Caused by Ionizing Radiation in Human Embryonic Stem Cells via Next-Generation Sequencing. Stem Cells International. 2015. Vol. 2016, no. 2016, pp.1-7.
https://search.emarefa.net/detail/BIM-1116008
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1116008