Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function
Joint Authors
Luthey-Schulten, Zaida
Thor, ShengShee
Peterson, Joseph R.
Source
Issue
Vol. 2017, Issue 2017 (31 Dec. 2017), pp.1-18, 18 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2017-01-04
Country of Publication
Egypt
No. of Pages
18
Main Subjects
Abstract EN
Decades of biochemical, bioinformatic, and sequencing data are currently being systematically compiled into genome-scale metabolic reconstructions (GEMs).
Such reconstructions are knowledge-bases useful for engineering, modeling, and comparative analysis.
Here we review the fifteen GEMs of archaeal species that have been constructed to date.
They represent primarily members of the Euryarchaeota with three-quarters comprising representative of methanogens.
Unlike other reviews on GEMs, we specially focus on archaea.
We briefly review the GEM construction process and the genealogy of the archaeal models.
The major insights gained during the construction of these models are then reviewed with specific focus on novel metabolic pathway predictions and growth characteristics.
Metabolic pathway usage is discussed in the context of the composition of each organism’s biomass and their specific energy and growth requirements.
We show how the metabolic models can be used to study the evolution of metabolism in archaea.
Conservation of particular metabolic pathways can be studied by comparing reactions using the genes associated with their enzymes.
This demonstrates the utility of GEMs to evolutionary studies, far beyond their original purpose of metabolic modeling; however, much needs to be done before archaeal models are as extensively complete as those for bacteria.
American Psychological Association (APA)
Thor, ShengShee& Peterson, Joseph R.& Luthey-Schulten, Zaida. 2017. Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function. Archaea،Vol. 2017, no. 2017, pp.1-18.
https://search.emarefa.net/detail/BIM-1125477
Modern Language Association (MLA)
Thor, ShengShee…[et al.]. Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function. Archaea No. 2017 (2017), pp.1-18.
https://search.emarefa.net/detail/BIM-1125477
American Medical Association (AMA)
Thor, ShengShee& Peterson, Joseph R.& Luthey-Schulten, Zaida. Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function. Archaea. 2017. Vol. 2017, no. 2017, pp.1-18.
https://search.emarefa.net/detail/BIM-1125477
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1125477