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HMMBinder: DNA-Binding Protein Prediction Using HMM Profile Based Features
Joint Authors
Rashid, Mahmood A.
Zaman, Rianon
Chowdhury, Shahana Yasmin
Sharma, Alok
Dehzangi, Abdollah
Shatabda, Swakkhar
Source
Issue
Vol. 2017, Issue 2017 (31 Dec. 2017), pp.1-10, 10 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2017-11-14
Country of Publication
Egypt
No. of Pages
10
Main Subjects
Abstract EN
DNA-binding proteins often play important role in various processes within the cell.
Over the last decade, a wide range of classification algorithms and feature extraction techniques have been used to solve this problem.
In this paper, we propose a novel DNA-binding protein prediction method called HMMBinder.
HMMBinder uses monogram and bigram features extracted from the HMM profiles of the protein sequences.
To the best of our knowledge, this is the first application of HMM profile based features for the DNA-binding protein prediction problem.
We applied Support Vector Machines (SVM) as a classification technique in HMMBinder.
Our method was tested on standard benchmark datasets.
We experimentally show that our method outperforms the state-of-the-art methods found in the literature.
American Psychological Association (APA)
Zaman, Rianon& Chowdhury, Shahana Yasmin& Rashid, Mahmood A.& Sharma, Alok& Dehzangi, Abdollah& Shatabda, Swakkhar. 2017. HMMBinder: DNA-Binding Protein Prediction Using HMM Profile Based Features. BioMed Research International،Vol. 2017, no. 2017, pp.1-10.
https://search.emarefa.net/detail/BIM-1137155
Modern Language Association (MLA)
Zaman, Rianon…[et al.]. HMMBinder: DNA-Binding Protein Prediction Using HMM Profile Based Features. BioMed Research International No. 2017 (2017), pp.1-10.
https://search.emarefa.net/detail/BIM-1137155
American Medical Association (AMA)
Zaman, Rianon& Chowdhury, Shahana Yasmin& Rashid, Mahmood A.& Sharma, Alok& Dehzangi, Abdollah& Shatabda, Swakkhar. HMMBinder: DNA-Binding Protein Prediction Using HMM Profile Based Features. BioMed Research International. 2017. Vol. 2017, no. 2017, pp.1-10.
https://search.emarefa.net/detail/BIM-1137155
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-1137155