DNA sequence matching utilizing exact and in-exact string matching with look-up table
Dissertant
Thesis advisor
al-Khalidi, Jihad O.
Adwan, Sahar
Comitee Members
Shatnawi, Umar Ali
Ababinah, Muhammad Husayn Salim
Bani Muhammad, Sad
University
Al albayt University
Faculty
Prince Hussein Bin Abdullah Faculty for Information Technology
Department
Department of Computer Science
University Country
Jordan
Degree
Master
Degree Date
2013
English Abstract
In Bioinformatics a sequence alignment is a way of arranging the sequences of DNA (Deoxyribonucleic Acid), RNA (Ribonucleic Acid), or protein to identify regions of similarity that maybe a consequence of functional, structural or evolutionary relationship between sequences In this thesis we present an algorithm that uses exact and inexact matching based on indexed local pair wise alignment of the DNA sequences.
The proposed algorithm is inspired from the well-known FASTA (fast-All) algorithm which is one of the main approximate string matching algorithms The experimental results have shown that the proposed algorithm performs better than FASTA algorithm in most of the cases.
Main Subjects
Topics
No. of Pages
44
Table of Contents
Table of contents.
Abstract.
Chapter One : introduction.
Chapter Two : bioinformatics and string matching.
Chapter Three : literature review.
Chapter Four : the proposed algorithm.
Chapter Five : system design and implementation.
Chapter Six : experimental results.
Chapter Seven : conclusion and future works.
References.
American Psychological Association (APA)
Assaf, Suzan Assaf Salih. (2013). DNA sequence matching utilizing exact and in-exact string matching with look-up table. (Master's theses Theses and Dissertations Master). Al albayt University, Jordan
https://search.emarefa.net/detail/BIM-321714
Modern Language Association (MLA)
Assaf, Suzan Assaf Salih. DNA sequence matching utilizing exact and in-exact string matching with look-up table. (Master's theses Theses and Dissertations Master). Al albayt University. (2013).
https://search.emarefa.net/detail/BIM-321714
American Medical Association (AMA)
Assaf, Suzan Assaf Salih. (2013). DNA sequence matching utilizing exact and in-exact string matching with look-up table. (Master's theses Theses and Dissertations Master). Al albayt University, Jordan
https://search.emarefa.net/detail/BIM-321714
Language
English
Data Type
Arab Theses
Record ID
BIM-321714
