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O18Quant : A Semiautomatic Strategy for Quantitative Analysis of High-Resolution 16O18O Labeled Data
Joint Authors
Miyagi, Masaru
Zeng, Rong
Guo, Yan
Source
Issue
Vol. 2014, Issue 2014 (31 Dec. 2014), pp.1-7, 7 p.
Publisher
Hindawi Publishing Corporation
Publication Date
2014-05-11
Country of Publication
Egypt
No. of Pages
7
Main Subjects
Abstract EN
Proteolytic 18O-labeling has been widely used in quantitative proteomics since it can uniformly label all peptides from different kinds of proteins.
There have been multiple algorithms and tools developed over the last few years to analyze high-resolution proteolytic 16O/18O labeled mass spectra.
We have developed a software package, O18Quant, which addresses two major issues in the previously developed algorithms.
First, O18Quant uses a robust linear model (RLM) for peptide-to-protein ratio estimation.
RLM can minimize the effect of outliers instead of iteratively removing them which is a common practice in other approaches.
Second, the existing algorithms lack applicable implementation.
We address this by implementing O18Quant using C# under Microsoft.net framework and R.
O18Quant automatically calculates the peptide/protein relative ratio and provides a friendly graphical user interface (GUI) which allows the user to manually validate the quantification results at scan, peptide, and protein levels.
The intuitive GUI of O18Quant can greatly enhance the user’s visualization and understanding of the data analysis.
O18Quant can be downloaded for free as part of the software suite ProteomicsTools.
American Psychological Association (APA)
Guo, Yan& Miyagi, Masaru& Zeng, Rong. 2014. O18Quant : A Semiautomatic Strategy for Quantitative Analysis of High-Resolution 16O18O Labeled Data. BioMed Research International،Vol. 2014, no. 2014, pp.1-7.
https://search.emarefa.net/detail/BIM-512495
Modern Language Association (MLA)
Guo, Yan…[et al.]. O18Quant : A Semiautomatic Strategy for Quantitative Analysis of High-Resolution 16O18O Labeled Data. BioMed Research International No. 2014 (2014), pp.1-7.
https://search.emarefa.net/detail/BIM-512495
American Medical Association (AMA)
Guo, Yan& Miyagi, Masaru& Zeng, Rong. O18Quant : A Semiautomatic Strategy for Quantitative Analysis of High-Resolution 16O18O Labeled Data. BioMed Research International. 2014. Vol. 2014, no. 2014, pp.1-7.
https://search.emarefa.net/detail/BIM-512495
Data Type
Journal Articles
Language
English
Notes
Includes bibliographical references
Record ID
BIM-512495